Paket: ssake (4.0-2)

[ Kaynak: ssake  ]

genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

Etiketler: Alan: Biyoloji, Geliştirildiği dil: Perl, implemented-in::python, interface::commandline, Kullanıcı Arayüzü: Komut Kabuğu, Rol: role::program, scope::utility, Amaç: Analiz

ssake ile İlgili Diğer Paketler

• dep: libperl4-corelibs-perl

  libraries historically supplied with Perl 4

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python

  interactive high-level object-oriented language (Python2 version)

• sug: ssake-examples

  example data for SSAKE, a genomic assembler of short reads

ssake indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
all	48,4 kB	213,0 kB	[dosya listesi]