Paket: pynast (1.2.2-4)

[ Kaynak: pynast  ]

alignment of short DNA sequences

The package provices a reimplementation of the Nearest Alignment Space Termination tool in Python. It was prepared for next generation sequencers.

Given a set of sequences and a template alignment, PyNAST will align the input sequences against the template alignment, and return a multiple sequence alignment which contains the same number of positions (or columns) as the template alignment. This facilitates the analysis of new sequences in the context of existing alignments, and additional data derived from existing alignments such as phylogenetic trees. Because any protein or nucleic acid sequences and template alignments can be provided, PyNAST is not limited to the analysis of 16s rDNA sequences.

pynast ile İlgili Diğer Paketler

• dep: libjs-jquery

  JavaScript library for dynamic web applications

• dep: libjs-underscore

  JavaScript's functional programming helper library

• dep: python

  interactive high-level object-oriented language (Python2 version)

  dep: python (<< 2.8)

  dep: python (>= 2.7)

• rec: blast2

  transitional dummy package to ncbi-blast+-legacy

• rec: clustalw

  global multiple nucleotide or peptide sequence alignment

• rec: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: muscle

  Multiple alignment program of protein sequences

• rec: python-mpi4py

  bindings of the Message Passing Interface (MPI) standard

• sug: uclust

  Paket mevcut değil

pynast indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
all	79,7 kB	302,0 kB	[dosya listesi]