Paket: pizzly (0.37.3+ds-5)

[ Kaynak: pizzly  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

pizzly ile İlgili Diğer Paketler

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: python3-h5py

  general-purpose Python interface to hdf5

pizzly indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
s390x	249,6 kB	876,0 kB	[dosya listesi]