Paket: clustalw (2.1+lgpl-7)

[ Kaynak: clustalw  ]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Etiketler: Biyoloji: Clustal/ALN, Proteinler, Alan: field::biology, field::biology:bioinformatics, Geliştirildiği dil: implemented-in::c++, interface::commandline, Kullanıcı Arayüzü: Metin Tabanlı Etkileşimli, Rol: role::program, scope::utility, Amaç: Karşılaştırma, Desteklenen Biçimler: works-with-format::plaintext, works-with::TODO

clustalw ile İlgili Diğer Paketler

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• sug: clustalx

  Multiple alignment of nucleic acid and protein sequences (graphical interface)

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• enh: bioperl-run

  BioPerl wrappers: scripts

• enh: emboss

  European molecular biology open software suite

• enh: t-coffee

  Multiple Sequence Alignment

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Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
mipsel	258,4 kB	912,0 kB	[dosya listesi]