Paket: barrnap (0.9+dfsg-3)

barrnap için bağlantılar

Debian Kaynakları:

barrnap Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [www.vicbioinformatics.com]

Benzer paketler:

rapid ribosomal RNA prediction

Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).

It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.

Etiketler: Alan: Biyoloji, Biyoinformatik, Geliştirildiği dil: implemented-in::perl, interface::commandline, Rol: Program, Amaç: use::searching, works-with::biological-sequence

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suite of utilities for comparing genomic features
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profile hidden Markov models for protein sequence analysis
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Larry Wall's Practical Extraction and Report Language

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Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
all	199,4 kB	1.437,0 kB	[dosya listesi]