Paket: python3-dna-jellyfish (2.3.0-15 ve diğerleri)

[ Kaynak: jellyfish  ]

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

python3-dna-jellyfish ile İlgili Diğer Paketler

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0) [armel, armhf, i386 değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libjellyfish-2.0-2 (>= 2.3.0)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [armel, armhf değil]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

python3-dna-jellyfish indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.3.0-15+b3	52,1 kB	175,0 kB	[dosya listesi]
arm64	2.3.0-15+b3	49,6 kB	171,0 kB	[dosya listesi]
armel	2.3.0-15+b3	51,9 kB	168,0 kB	[dosya listesi]
armhf	2.3.0-15+b3	52,8 kB	140,0 kB	[dosya listesi]
i386	2.3.0-15+b3	60,5 kB	184,0 kB	[dosya listesi]
mips64el	2.3.0-15+b3	50,5 kB	242,0 kB	[dosya listesi]
ppc64el	2.3.0-15+b3	55,1 kB	235,0 kB	[dosya listesi]