Paket: r-bioc-degreport (1.34.0+dfsg-1)

[ Kaynak: r-bioc-degreport  ]

BioConductor report of DEG analysis

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

r-bioc-degreport ile İlgili Diğer Paketler

• dep: r-api-4.0

  sanal paketi sağlayan r-base-core

• dep: r-api-bioc-3.16

  sanal paketi sağlayan r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-complexheatmap

  make complex heatmaps using GNU R

• dep: r-bioc-consensusclusterplus

  GNU R determining cluster count and membership

• dep: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-broom

  convert statistical analysis objects into tidy data frames with GNU R

• dep: r-cran-circlize

  Circular Visualization

• dep: r-cran-cluster

  GNU R package for cluster analysis by Rousseeuw et al

• dep: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-ggdendro

  GNU R create dendrograms and tree diagrams using 'ggplot2'

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• dep: r-cran-logging

  GNU R logging package

• dep: r-cran-magrittr

  GNU R forward-pipe operator

• dep: r-cran-psych

  GNU R procedures for psychological, psychometric, and personality research

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-reshape

  Flexibly reshape data

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales

  Scale functions for visualization

• dep: r-cran-stringr

  Make it easier to work with strings

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr

  GNU R package to easily tidy data

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• sug: r-cran-testthat

  GNU R testsuite

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