[ Kaynak: mosdepth ]
Paket: mosdepth (0.3.3+ds-2)
mosdepth için bağlantılar
Debian Kaynakları:
- Hata Raporları
- Developer Information
- Debian Değişim Günlüğü
- Telif Hakkı Dosyası
- Debian Yama Takipçisi
mosdepth Kaynak Paketini İndir:
Geliştiriciler:
- Debian Med Packaging Team (QA Sayfası, Posta Arşivi)
- Steffen Moeller (QA Sayfası)
- Nilesh Patra (QA Sayfası)
Dış Kaynaklar:
- Ana Sayfa [github.com]
Benzer paketler:
BAM/CRAM depth calculation biological sequencing
Many small reads are produced by high-throughput "next generation" sequencing technologies. The final sequence is derived from how these reads are overlapping towards a consensus. The more reads are covering/confirming parts of a nucleotide seq, the higher the confidence is. Too many reads would be indicative of e.g. repeats in the genome.
mosdepth can output:
* per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome. * mean per-window depth given a window size--as would be used for CNV calling. * the mean per-region given a BED file of regions. * a distribution of proportion of bases covered at or above a given threshold for each chromosome and genome-wide. * quantized output that merges adjacent bases as long as they fall in the same coverage bins e.g. (10-20) * threshold output to indicate how many bases in each region are covered at the given thresholds.when appropriate, the output files are bgzipped and indexed for ease of use.
mosdepth ile İlgili Diğer Paketler
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
mosdepth indir
Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
---|---|---|---|
i386 | 171,1 kB | 591,0 kB | [dosya listesi] |