Paket: srst2 (0.2.0-12) [debports]

[ Källkod:  ]

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Andra paket besläktade med srst2

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-scipy

  scientific tools for Python 3

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: python3-rpy2

  Python3 interface to the GNU R language and environment (version 2)

Hämta srst2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
sh4 (inofficiell anpassning)	59,8 kbyte	265,0 kbyte	[filförteckning]