Paket: discosnp (1:2.6.2-3 och andra) [debports]

[ Källkod:  ]

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

Andra paket besläktade med discosnp

• dep: gatb-core

  Genome Analysis Toolbox with de-Bruijn graph

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgatbcore3 (>= 1.4.2+dfsg)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc-s1 (>= 3.0)

  GCC stödbibliotek

• dep: libhdf5-103-1t64

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.6)

  Kompressionsbibliotek - körtidspaket

Hämta discosnp

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
ppc64 (inofficiell anpassning)	1:2.6.2-3+b1	1.425,6 kbyte	3.263,0 kbyte	[filförteckning]