Paket: stacks (2.66+dfsg-1 och andra) [debports]

[ Källkod:  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Andra paket besläktade med stacks

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6.1 (>= 2.37)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libgcc-s1 (>= 4.2)

  GCC stödbibliotek

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• dep: libunwind8

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  Kompressionsbibliotek - körtidspaket

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  också ett virtuellt paket som tillhandahålls av r-cran-littler

• sug: gdb

  GNU Debugger
  också ett virtuellt paket som tillhandahålls av gdb-minimal

Hämta stacks

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
ia64 (inofficiell anpassning)	2.66+dfsg-1+b1	1.286,9 kbyte	11.193,0 kbyte	[filförteckning]