Paket: flye (2.9.3+dfsg2-1) [debports]

[ Källkod:  ]

de novo assembler for single molecule sequencing reads using repeat graphs

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

Andra paket besläktade med flye

• dep: libc6.1 (>= 2.37)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC stödbibliotek

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• dep: libunwind8

  library to determine the call-chain of a program - runtime

• dep: minimap2

  versatile pairwise aligner for genomic and spliced nucleotide sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-six

  Python 2 and 3 compatibility library

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

Hämta flye

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
ia64 (inofficiell anpassning)	22.763,6 kbyte	38.428,0 kbyte	[filförteckning]