Paket: hinge (0.5.0-7 och andra)

[ Källkod: hinge  ]

long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

Andra paket besläktade med hinge

• dep: daligner

  local alignment discovery between long nucleotide sequencing reads

• dep: dascrubber

  alignment-based scrubbing pipeline for DNA sequencing reads

• dep: dazzdb

  manage nucleotide sequencing read data

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libfmt9 (>= 9.0.0+ds1)

  fast type-safe C++ formatting library -- library

• dep: libgcc-s1 (>= 7)

  GCC stödbibliotek

• dep: libgomp1 (>= 4.2.1)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11)

  GNU standardbibliotek v3 för C++

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-colormap

  ease manipulation of matplotlib colormaps and color codecs (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pbcore

  Python 3 library for processing PacBio data files

• dep: python3-ujson

  ultra fast JSON encoder and decoder for Python 3

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

Hämta hinge

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
i386	0.5.0-7+b1	494,7 kbyte	3.511,0 kbyte	[filförteckning]