Paket: art-nextgen-simulation-tools (20160605+dfsg-5 och andra)

[ Källkod: art-nextgen-simulation-tools  ]

simulation tools to generate synthetic next-generation sequencing reads

ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods.

Andra paket besläktade med art-nextgen-simulation-tools

• dep: libc6 (>= 2.37) [sh4]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.38) [ej alpha, ia64, sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [ej armel, armhf, hppa, ia64, m68k]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC stödbibliotek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC stödbibliotek

• dep: libgsl27 (>= 2.7.1) [ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgsl28 (>= 2.8+dfsg) [ej ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.8) [sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• sug: art-nextgen-simulation-tools-profiles

  profiles for art simulation tools

Hämta art-nextgen-simulation-tools

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	20160605+dfsg-5+b1	1.638,0 kbyte	9.228,0 kbyte	[filförteckning]
amd64	20160605+dfsg-5+b1	1.649,3 kbyte	9.109,0 kbyte	[filförteckning]
arm64	20160605+dfsg-5+b1	1.632,3 kbyte	9.161,0 kbyte	[filförteckning]
armel	20160605+dfsg-5+b1	1.625,3 kbyte	9.042,0 kbyte	[filförteckning]
armhf	20160605+dfsg-5+b1	1.633,2 kbyte	8.950,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	20160605+dfsg-5+b1	1.636,5 kbyte	9.056,0 kbyte	[filförteckning]
i386	20160605+dfsg-5+b1	1.654,8 kbyte	9.134,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	20160605+dfsg-5	1.670,8 kbyte	9.483,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	20160605+dfsg-5+b1	1.633,0 kbyte	9.086,0 kbyte	[filförteckning]
mips64el	20160605+dfsg-5+b1	1.641,6 kbyte	9.240,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	20160605+dfsg-5+b1	1.646,6 kbyte	9.225,0 kbyte	[filförteckning]
ppc64el	20160605+dfsg-5+b1	1.648,2 kbyte	9.225,0 kbyte	[filförteckning]
riscv64	20160605+dfsg-5+b2	1.644,2 kbyte	9.001,0 kbyte	[filförteckning]
s390x	20160605+dfsg-5+b1	1.646,0 kbyte	9.097,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	20160605+dfsg-5+b1	1.668,7 kbyte	9.161,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	20160605+dfsg-5+b1	1.631,1 kbyte	10.706,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	20160605+dfsg-5+b1	1.646,4 kbyte	9.086,0 kbyte	[filförteckning]