Pakket: art-nextgen-simulation-tools (20160605+dfsg-5 en anderen)

[ Bron: art-nextgen-simulation-tools  ]

simulation tools to generate synthetic next-generation sequencing reads

ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods.

Andere aan art-nextgen-simulation-tools gerelateerde pakketten

• dep: libc6 (>= 2.37) [sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.38) [niet alpha, ia64, sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, hppa, ia64, m68k]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgsl27 (>= 2.7.1) [ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgsl28 (>= 2.8+dfsg) [niet ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.8) [sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• sug: art-nextgen-simulation-tools-profiles

  profiles for art simulation tools

art-nextgen-simulation-tools downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	20160605+dfsg-5+b1	1.638,0 kB	9.228,0 kB	[overzicht]
amd64	20160605+dfsg-5+b1	1.649,3 kB	9.109,0 kB	[overzicht]
arm64	20160605+dfsg-5+b1	1.632,3 kB	9.161,0 kB	[overzicht]
armel	20160605+dfsg-5+b1	1.625,3 kB	9.042,0 kB	[overzicht]
armhf	20160605+dfsg-5+b1	1.633,2 kB	8.950,0 kB	[overzicht]
hppa (unofficial port)	20160605+dfsg-5+b1	1.636,5 kB	9.056,0 kB	[overzicht]
i386	20160605+dfsg-5+b1	1.654,8 kB	9.134,0 kB	[overzicht]
ia64 (unofficial port)	20160605+dfsg-5	1.670,8 kB	9.483,0 kB	[overzicht]
m68k (unofficial port)	20160605+dfsg-5+b1	1.633,0 kB	9.086,0 kB	[overzicht]
mips64el	20160605+dfsg-5+b1	1.641,6 kB	9.240,0 kB	[overzicht]
ppc64 (unofficial port)	20160605+dfsg-5+b1	1.646,6 kB	9.225,0 kB	[overzicht]
ppc64el	20160605+dfsg-5+b1	1.648,2 kB	9.225,0 kB	[overzicht]
riscv64	20160605+dfsg-5+b2	1.644,2 kB	9.001,0 kB	[overzicht]
s390x	20160605+dfsg-5+b1	1.646,0 kB	9.097,0 kB	[overzicht]
sh4 (unofficial port)	20160605+dfsg-5+b1	1.668,7 kB	9.161,0 kB	[overzicht]
sparc64 (unofficial port)	20160605+dfsg-5+b1	1.631,1 kB	10.706,0 kB	[overzicht]
x32 (unofficial port)	20160605+dfsg-5+b1	1.646,4 kB	9.086,0 kB	[overzicht]