Paket: seqan-raptor (3.0.1+ds-5)

[ Källkod: seqan-raptor  ]

pre-filter for querying very large collections of nucleotide sequences

Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.

Andra paket besläktade med seqan-raptor

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC stödbibliotek

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• dep: libyaml-cpp0.8 (>= 0.7.0)

  YAML parser and emitter for C++

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

• sug: cwl-runner

  virtuellt paket som tillhandahålls av cwltool, toil

Hämta seqan-raptor

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	646,1 kbyte	2.087,0 kbyte	[filförteckning]