Pakket: seqan-raptor (3.0.1+ds-5)

[ Bron: seqan-raptor  ]

pre-filter for querying very large collections of nucleotide sequences

Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	646,1 kB	2.087,0 kB	[overzicht]