Paket: libhts-dev (1.21+ds-0+exp2) [debports]

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development files for the HTSlib

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package contains development files for the HTSlib: headers, static library, manual pages, etc.

For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix.

Andra paket besläktade med libhts-dev

• dep: libbz2-dev

  high-quality block-sorting file compressor library - development

• dep: libcurl4-gnutls-dev

  development files and documentation for libcurl (GnuTLS flavour)

• dep: libdeflate-dev

  headers for whole-buffer compression and decompression library

• dep: libhts3t64 (= 1.21+ds-0+exp2)

  C library for high-throughput sequencing data formats

• dep: liblzma-dev

  XZ-format compression library - development files

• dep: zlib1g-dev

  compression library - development

Hämta libhts-dev

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
hppa (inofficiell anpassning)	1.763,7 kbyte	5.581,0 kbyte	[filförteckning]