Paket: giira (0.0.20140625-2)

[ Källkod: giira  ]

RNA-Seq driven gene finding incorporating ambiguous reads

GIIRA is a gene prediction method that identifies potential coding regions exclusively based on the mapping of reads from an RNA-Seq experiment. It was foremost designed for prokaryotic gene prediction and is able to resolve genes within the expressed region of an operon. However, it is also applicable to eukaryotes and predicts exon intron structures as well as alternative isoforms.

Andra paket besläktade med giira

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: glpk-utils

  linear programming kit - utility files

• dep: libglpk-java

  Java binding to the GNU Linear Programming Kit

• dep: tophat

  fast splice junction mapper for RNA-Seq reads

Hämta giira

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	140,1 kbyte	172,0 kbyte	[filförteckning]