Paket: chromhmm (1.18+dfsg-1)

[ Källkod: chromhmm  ]

Chromatin state discovery and characterization

ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.

Andra paket besläktade med chromhmm

• dep: default-jre

  Standard Java or Java compatible Runtime

  eller java7-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre

  eller java8-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre

  eller java9-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre

  eller java10-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre

  eller java11-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre

• dep: jarwrapper (>= 0.5)

  Run executable Java .jar files

• dep: libbatik-java

  xml.apache.org SVG Library

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• dep: libjheatchart-java

  Heat map charting library for Java

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	175,2 kbyte	191,0 kbyte	[filförteckning]