Paket: r-bioc-purecn (1.20.0+dfsg-3)

[ Källkod: r-bioc-purecn  ]

copy number calling and SNV classification using targeted short read sequencing

This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.

Andra paket besläktade med r-bioc-purecn

• dep: r-api-4.0

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.12

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

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• dep: r-bioc-biocgenerics

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• dep: r-bioc-biostrings

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• dep: r-bioc-dnacopy

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• dep: r-bioc-genomicranges (>= 1.20.3)

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• dep: r-bioc-iranges (>= 2.2.1)

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• dep: r-bioc-rhdf5

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• dep: r-bioc-rsamtools

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• dep: r-bioc-rtracklayer

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• dep: r-cran-vgam

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• rec: r-cran-testthat

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• sug: r-bioc-biocparallel

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• sug: r-bioc-biocstyle

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• sug: r-bioc-org.hs.eg.db

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• sug: r-cran-covr

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• sug: r-cran-jsonlite

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• sug: r-cran-knitr

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• sug: r-cran-optparse

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• sug: r-cran-pscbs

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• sug: r-cran-rmarkdown

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	5.180,1 kbyte	8.174,0 kbyte	[filförteckning]