Paket: cat-bat (5.2.2-1)

Länkar för cat-bat

Debianresurser:

Hämta källkodspaketet cat-bat:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Andreas Tille (QA-sida)
Nilesh Patra (QA-sida)

Externa resurser:

Hemsida [github.com]

Liknande paket:

taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately.

Andra paket besläktade med cat-bat

beror

rekommenderar

föreslår

enhances

dep: diamond-aligner

accelerated BLAST compatible local sequence aligner
dep: prodigal

Microbial (bacterial and archaeal) gene finding program
dep: python3

interactive high-level object-oriented language (default python3 version)

Hämta cat-bat

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	28,8 kbyte	180,0 kbyte	[filförteckning]
arm64	28,8 kbyte	180,0 kbyte	[filförteckning]
ppc64el	28,8 kbyte	180,0 kbyte	[filförteckning]
s390x	28,8 kbyte	180,0 kbyte	[filförteckning]