Paket: boxshade (3.3.1-14)

[ Källkod: boxshade  ]

Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Märken: Biologi: Clustal/ALN, Proteiner, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, use::typesetting, Supports Format: works-with-format::html, works-with-format::plaintext, works-with-format::postscript, works-with-format::tex, Works with: Behöver ett märke till, Text

Andra paket besläktade med boxshade

• dep: libc6 (>= 2.14) [amd64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [ej amd64, arm64, ppc64el]

• sug: kalign

  Global and progressive multiple sequence alignment

  eller clustalw

  global multiple nucleotide or peptide sequence alignment

  eller mafft

  Multiple alignment program for amino acid or nucleotide sequences

  eller hmmer

  profile hidden Markov models for protein sequence analysis

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• sug: texlive-latex-extra

  TeX Live: LaTeX additional packages

• sug: xfig

  Facility for Interactive Generation of figures under X11

Hämta boxshade

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	54,5 kbyte	161,0 kbyte	[filförteckning]
arm64	53,1 kbyte	160,0 kbyte	[filförteckning]
armel	54,6 kbyte	163,0 kbyte	[filförteckning]
armhf	52,9 kbyte	135,0 kbyte	[filförteckning]
i386	56,0 kbyte	176,0 kbyte	[filförteckning]
mips64el	53,3 kbyte	187,0 kbyte	[filförteckning]
mipsel	52,9 kbyte	173,0 kbyte	[filförteckning]
ppc64el	56,4 kbyte	193,0 kbyte	[filförteckning]
s390x	52,9 kbyte	168,0 kbyte	[filförteckning]