Paket: plasmidseeker (1.3+dfsg-3)

[ Källkod: plasmidseeker  ]

identification of known plasmids from whole-genome sequencing reads

PlasmidSeeker is a k-mer based program for the identification of known plasmids from bacterial whole genome sequencing reads.

PlasmidSeeker that enables the detection of plasmids from bacterial WGS data without read assembly. The PlasmidSeeker algorithm is based on k-mers and uses k-mer abundance to distinguish between plasmid and bacterial sequences. The performance of PlasmidSeeker was tested on a set of simulated and real bacterial WGS samples, resulting in 100% sensitivity and 99.98% specificity.

Andra paket besläktade med plasmidseeker

• dep: genometester

  toolkit for performing set operations on k-mer lists

Hämta plasmidseeker

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	26,6 kbyte	94,0 kbyte	[filförteckning]
arm64	26,6 kbyte	94,0 kbyte	[filförteckning]
armel	26,6 kbyte	94,0 kbyte	[filförteckning]
armhf	26,6 kbyte	94,0 kbyte	[filförteckning]
i386	26,6 kbyte	94,0 kbyte	[filförteckning]
mips64el	26,6 kbyte	94,0 kbyte	[filförteckning]
mipsel	26,6 kbyte	94,0 kbyte	[filförteckning]
ppc64el	26,6 kbyte	94,0 kbyte	[filförteckning]
s390x	26,6 kbyte	94,0 kbyte	[filförteckning]