Package: plasmidseeker (1.3+dfsg-3)

[ Source: plasmidseeker  ]

identification of known plasmids from whole-genome sequencing reads

PlasmidSeeker is a k-mer based program for the identification of known plasmids from bacterial whole genome sequencing reads.

PlasmidSeeker that enables the detection of plasmids from bacterial WGS data without read assembly. The PlasmidSeeker algorithm is based on k-mers and uses k-mer abundance to distinguish between plasmid and bacterial sequences. The performance of PlasmidSeeker was tested on a set of simulated and real bacterial WGS samples, resulting in 100% sensitivity and 99.98% specificity.

Other Packages Related to plasmidseeker

• dep: genometester

  toolkit for performing set operations on k-mer lists

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Architecture	Package Size	Installed Size	Files
amd64	26.6 kB	94.0 kB	[list of files]
arm64	26.6 kB	94.0 kB	[list of files]
armel	26.6 kB	94.0 kB	[list of files]
armhf	26.6 kB	94.0 kB	[list of files]
i386	26.6 kB	94.0 kB	[list of files]
mips64el	26.6 kB	94.0 kB	[list of files]
mipsel	26.6 kB	94.0 kB	[list of files]
ppc64el	26.6 kB	94.0 kB	[list of files]
s390x	26.6 kB	94.0 kB	[list of files]