Paket: bamtools (2.5.2+dfsg-4)

[ Källkod: bamtools  ]

toolkit for manipulating BAM (genome alignment) files

BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research.

BamTools provides both a C++ API for BAM file support as well as a command-line toolkit.

This is the bamtools command-line toolkit.

Available bamtools commands:

 convert  Converts between BAM and a number of other formats
 count    Prints number of alignments in BAM file(s)
 coverage Prints coverage statistics from the input BAM file
 filter   Filters BAM file(s) by user-specified criteria
 header   Prints BAM header information
 index    Generates index for BAM file
 merge    Merge multiple BAM files into single file
 random   Select random alignments from existing BAM file(s), intended more
          as a testing tool.
 resolve  Resolves paired-end reads (marking the IsProperPair flag as needed)
 revert   Removes duplicate marks and restores original base qualities
 sort     Sorts the BAM file according to some criteria
 split    Splits a BAM file on user-specified property, creating a new BAM
          output file for each value found
 stats    Prints some basic statistics from input BAM file(s)

Märken: Implemented in: C++, Role: Program

Andra paket besläktade med bamtools

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ej armel, armhf]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libjsoncpp25 (>= 1.9.5)

  library for reading and writing JSON for C++

• dep: libstdc++6 (>= 11)

  GNU standardbibliotek v3 för C++

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Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	188,4 kbyte	630,0 kbyte	[filförteckning]
arm64	164,2 kbyte	598,0 kbyte	[filförteckning]
armel	160,9 kbyte	597,0 kbyte	[filförteckning]
armhf	168,7 kbyte	469,0 kbyte	[filförteckning]
i386	202,3 kbyte	697,0 kbyte	[filförteckning]
mips64el	155,8 kbyte	754,0 kbyte	[filförteckning]
mipsel	161,4 kbyte	744,0 kbyte	[filförteckning]
ppc64el	187,5 kbyte	790,0 kbyte	[filförteckning]
s390x	163,1 kbyte	646,0 kbyte	[filförteckning]