Balík: mira-assembler (4.9.6-11)

[ Zdroj: mira  ]

Whole Genome Shotgun and EST Sequence Assembler

The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof.

The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments.

The package provides the following executables: Binaries provided:

 * mira: for assembly of genome sequences
 * miramem: estimating memory needed to assemble projects.
 * mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
 * miraconvert: is a tool to convert, extract and sometimes recalculate all
   kinds of data related to sequence assembly files.

Značky: Role: Program

Ostatné balíky súvisiace s balíkom mira-assembler

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  operácie so súborovým systémom (portabilné cesty, prechádzanie adresárov atď.) v C++

• dep: libboost-thread1.83.0 (>= 1.83.0)

  portabilný multi-threading pre C++

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libexpat1 (>= 2.0.1)

  knižnica jazyka C na syntaktickú analýzu XML - dynamické knižnice

• dep: libgcc-s1 (>= 3.0)

  podporná knižnica GCC

• dep: libgomp1 (>= 4.9)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 13.1)

  štandardná knižnica C++ GNU v3

• dep: zlib1g (>= 1:1.2.6)

  komprimačná knižnica - dynamická verzia

• rec: mira-rfam-12s-rrna

  extract of RFAM 12 rRNA database

• sug: mira-doc

  documentation for the mira assembler

Stiahnuť mira-assembler

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
ppc64el	2,535.8 kB	8,096.0 kB	[zoznam súborov]