Paket: mira-assembler (4.9.6-11)

[ Quellcode: mira  ]

Whole Genome Shotgun and EST Sequence Assembler

The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof.

The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments.

The package provides the following executables: Binaries provided:

 * mira: for assembly of genome sequences
 * miramem: estimating memory needed to assemble projects.
 * mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
 * miraconvert: is a tool to convert, extract and sometimes recalculate all
   kinds of data related to sequence assembly files.

Markierungen: Rolle: Programm

Andere Pakete mit Bezug zu mira-assembler

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  Dateisystemoperationen (portable Pfade, Iterationen über Verzeichnisse, usw.) in C++

• dep: libboost-thread1.83.0 (>= 1.83.0)

  Portierbares C++-Multi-Threading

• dep: libc6 (>= 2.34)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libexpat1 (>= 2.0.1)

  C-Bibliothek zur XML-Analyse - Laufzeitbibliothek

• dep: libgcc-s1 (>= 3.0)

  GCC Support-Bibliothek

• dep: libgomp1 (>= 4.9)

  Unterstützungsbibliothek für GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 13.1)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: zlib1g (>= 1:1.2.6)

  Kompressions-Bibliothek - Laufzeit

• rec: mira-rfam-12s-rrna

  extract of RFAM 12 rRNA database

• sug: mira-doc

  documentation for the mira assembler

mira-assembler herunterladen

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