Balík: pbhoney (15.8.24+dfsg-8)

[ Zdroj: pbsuite  ]

genomic structural variation discovery

PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.

PBHoney is part of the PBSuite.

Ostatné balíky súvisiace s balíkom pbhoney

• dep: blasr

  mapping single-molecule sequencing reads

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-h5py

  general-purpose Python interface to hdf5

• dep: python3-intervaltree-bio

  Interval tree convenience classes for genomic data -- Python 3 library

• dep: python3-networkx

  nástroj na tvorbu, manipuláciu a študovanie komplexných sietí - Python 3

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pbbanana (= 15.8.24+dfsg-8)

  additional utilities for the pbsuite

• dep: python3-pbsuite-utils (= 15.8.24+dfsg-8)

  software for Pacific Biosciences sequencing data -- Python utilities

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: pbdagcon

  sequence consensus using directed acyclic graphs

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