Balík: ragout (2.3-5) [debports]

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Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

Ostatné balíky súvisiace s balíkom ragout

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s4 (>= 4.1.1)

  podporná knižnica GCC

• dep: libstdc++6 (>= 13.1)

  štandardná knižnica C++ GNU v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx

  nástroj na tvorbu, manipuláciu a študovanie komplexných sietí - Python 3

• dep: python3-six

  Python 2 and 3 compatibility library

• rec: sibelia

  comparative genomics tool

Stiahnuť ragout

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
hppa (neoficiálny port)	2,076.1 kB	9,640.0 kB	[zoznam súborov]