Balík: iva (1.0.11+ds-5) [debports]
Odkazy pre iva
Zdroje Debian:
Stiahnuť zdrojový balík :
NenájdenýSprávcovia:
Externé zdroje:
- Domovská stránka [github.com]
Podobné balíky:
iterative virus sequence assembler
IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth.
IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence.
Ostatné balíky súvisiace s balíkom iva
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- dep: default-jre-headless
- Standard Java or Java compatible Runtime (headless)
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- dep: fastaq
- FASTA and FASTQ file manipulation tools
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- dep: kmc
- count kmers in genomic sequences
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: perl
- Practical Extraction and Report Language od Larryho Walla
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-networkx
- nástroj na tvorbu, manipuláciu a študovanie komplexných sietí - Python 3
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-packaging
- základné nástroje balíkov jazyka Python 3
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: smalt
- Sequence Mapping and Alignment Tool
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- rec: bioperl
- nástroje jazyka Perl na výpočtovú molekulárnu biológiu
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- rec: r-base-core
- jadro GNU R na štatistické výpočty a grafický systém
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- rec: trimmomatic
- flexible read trimming tool for Illumina NGS data
Stiahnuť iva
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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alpha (neoficiálny port) | 8,380.5 kB | 8,770.0 kB | [zoznam súborov] |