Balík: trinityrnaseq (2.6.6+dfsg-6)

[ Zdroj: trinityrnaseq  ]

RNA-Seq De novo Assembly

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.

Ostatné balíky súvisiace s balíkom trinityrnaseq

• dep: berkeley-express

  Streaming quantification for high-throughput sequencing

• dep: bowtie

  Ultrafast memory-efficient short read aligner

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: curl

  nástroj príkazového riadka na prenos údajov so syntaxou URL

• dep: default-jre-headless

  štandardné dynamické prostredie Java alebo kompatibilné s Javou (bez displeja)

• dep: jaligner

  Smith-Waterman algorithm with Gotoh's improvement

• dep: jellyfish

  count k-mers in DNA sequences

• dep: libc6 (>= 2.27)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libcommons-collections4-java

  Apache Commons Collections - Extended Collections API for Java

• dep: libgcc1 (>= 1:3.0)

  podporná knižnica GCC

• dep: libgetopt-java

  GNU getopt - port do jazyka Java

• dep: libgomp1 (>= 4.9)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libhts2 (>= 1.0)

  C library for high-throughput sequencing data formats

• dep: libjung-free-java

  Java Universal Network/Graph Framework

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: libwww-perl

  jednoduché a konzistentné rozhranie k www

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: parafly

  parallel command processing using OpenMP

• dep: perl

  Practical Extraction and Report Language od Larryho Walla

• dep: python3-numpy

  schopnosti rýchlych polí do jazyka Python 3

• dep: r-base-core

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-bioc-qvalue

  GNU R package for Q-value estimation for FDR control

• dep: r-cran-cluster

  balík GNU R na klastrovú analýzu, ktorý napísali Rousseeuw et al

• dep: rsem

  RNA-Seq by Expectation-Maximization

• dep: salmon

  wicked-fast transcript quantification from RNA-seq data

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: transdecoder

  find coding regions within RNA transcript sequences

• dep: trimmomatic

  flexible read trimming tool for Illumina NGS data

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

• rec: trinityrnaseq-examples

  RNA-Seq De novo Assembly common example and testing files

• sug: collectl

  nástroj na zhromažďovanie dát o výkonnosti Linuxu

Stiahnuť trinityrnaseq

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	1,794.9 kB	8,883.0 kB	[zoznam súborov]