Balík: sim4 (0.0.20121010-5)
Odkazy pre sim4
Zdroje Debian:
Stiahnuť zdrojový balík sim4:
Správcovia:
- Debian Med Packaging Team (Stránka QA, Konferencia)
- Nelson A. de Oliveira (Stránka QA)
- Andreas Tille (Stránka QA)
Externé zdroje:
- Domovská stránka [globin.bx.psu.edu]
Podobné balíky:
tool for aligning cDNA and genomic DNA
sim4 is a similarity-based tool for aligning an expressed DNA sequence (EST, cDNA, mRNA) with a genomic sequence for the gene. It also detects end matches when the two input sequences overlap at one end (i.e., the start of one sequence overlaps the end of the other).
sim4 employs a blast-based technique to first determine the basic matching blocks representing the "exon cores". In this first stage, it detects all possible exact matches of W-mers (i.e., DNA words of size W) between the two sequences and extends them to maximal scoring gap-free segments. In the second stage, the exon cores are extended into the adjacent as-yet-unmatched fragments using greedy alignment algorithms, and heuristics are used to favor configurations that conform to the splice-site recognition signals (GT-AG, CT-AC). If necessary, the process is repeated with less stringent parameters on the unmatched fragments.
Ostatné balíky súvisiace s balíkom sim4
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- dep: libc6 (>= 2.14) [amd64]
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.7) [armhf, i386]
Stiahnuť sim4
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
---|---|---|---|
amd64 | 387.0 kB | 453.0 kB | [zoznam súborov] |
arm64 | 380.3 kB | 441.0 kB | [zoznam súborov] |
armhf | 379.7 kB | 416.0 kB | [zoznam súborov] |
i386 | 387.6 kB | 460.0 kB | [zoznam súborov] |