Balík: physamp (1.1.0-1)

[ Zdroj: physamp  ]

sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

Ostatné balíky súvisiace s balíkom physamp

• dep: libbpp-core4 [nie amd64]

  Bio++ Core library

  dep: libbpp-core4 (>= 2.4.0) [amd64]

• dep: libbpp-phyl12 [nie amd64]

  Bio++ Phylogenetic library

  dep: libbpp-phyl12 (>= 2.4.0) [amd64]

• dep: libbpp-seq12 [nie amd64]

  Bio++ Sequence library

  dep: libbpp-seq12 (>= 2.4.0) [amd64]

• dep: libc6 (>= 2.14) [amd64]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [nie armhf]

  podporná knižnica GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

Stiahnuť physamp

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	264.9 kB	466.0 kB	[zoznam súborov]
arm64	260.4 kB	458.0 kB	[zoznam súborov]
armhf	253.1 kB	380.0 kB	[zoznam súborov]
i386	268.6 kB	452.0 kB	[zoznam súborov]