Paketti: physamp (1.1.0-1)

[ Source: physamp  ]

sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

Muut pakettiin physamp liittyvät paketit

• dep: libbpp-core4 [ei amd64]

  Bio++ Core library

  dep: libbpp-core4 (>= 2.4.0) [amd64]

• dep: libbpp-phyl12 [ei amd64]

  Bio++ Phylogenetic library

  dep: libbpp-phyl12 (>= 2.4.0) [amd64]

• dep: libbpp-seq12 [ei amd64]

  Bio++ Sequence library

  dep: libbpp-seq12 (>= 2.4.0) [amd64]

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [ei armhf]

  GCC:n apukirjasto

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

Imuroi physamp

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	264.9 kt	466.0 kt	[tiedostoluettelo]
arm64	260.4 kt	458.0 kt	[tiedostoluettelo]
armhf	253.1 kt	380.0 kt	[tiedostoluettelo]
i386	268.6 kt	452.0 kt	[tiedostoluettelo]