Balík: topp (2.4.0-real-1)

[ Zdroj: openms  ]

set of programs implementing The OpenMS Proteomic Pipeline

TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are :

  - TOPPView: A viewer for mass spectrometry data.
  - TOPPAS: An assistant for GUI-driven TOPP workflow design.
  - DTAExtractor: Extracts spectra of an MS run file to several
    files in DTA format.
  - FileConverter:  Converts between different MS file formats.
  - FileFilter: Extracts or manipulates portions of data from peak,
    feature or consensus feature files.
  - SpectraMerger: Merges spectra from an LC/MS map, either by
    precursor or by RT blocks.
  - BaselineFilter: Removes the baseline from profile spectra using a
    top-hat filter.
  - InternalCalibration: Applies an internal calibration.
  - PTModel: Trains a model for the prediction of proteotypic
    peptides from a training set.
  - RTPredict: Predicts retention times for peptides using a model
    trained by RTModel.
  - ExecutePipeline: Executes workflows created by TOPPAS.

Značky: Sada nástrojov používateľského rozhrania: Qt

Ostatné balíky súvisiace s balíkom topp

• dep: coinor-libcbc3

  Coin-or branch-and-cut mixed integer programming solver (shared libraries)

• dep: coinor-libcgl1

  COIN-OR Cut Generation Library

• dep: coinor-libclp1

  Coin-or linear programming solver (shared libraries)

• dep: coinor-libcoinutils3v5

  Coin-or collection of utility classes (binaries and libraries)

• dep: coinor-libosi1v5

  COIN-OR Open Solver Interface

• dep: libboost-date-time1.67.0

  knižnice na prácu s dátumom a časom založené na konceptoch generického programovania

• dep: libboost-iostreams1.67.0

  knižnica Boost.Iostreams

• dep: libboost-math1.67.0

  Boost.Math Library

• dep: libboost-regex1.67.0 (>= 1.67.0-10)

  knižnica regulárnych výrazov pre C++

• dep: libbz2-1.0

  kvalitná knižnica na komprimáciu súborov s triedením blokov - dynamická knižnica

• dep: libc6 (>= 2.14)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  podporná knižnica GCC

• dep: libglpk40 (>= 4.59)

  sada na lineárne programovanie s podporou celých čísel (MIP)

• dep: libgomp1 (>= 4.9)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libopenms2.4.0 (= 2.4.0-real-1)

  library for LC/MS data management and analysis - runtime

• dep: libqt5core5a (>= 5.11.0~rc1)

  základný modul Qt 5

• dep: libqt5gui5 (>= 5.8.0)

  modul grafického používateľského rozhrania Qt 5

• dep: libqt5network5 (>= 5.7.0)

  modul siete Qt 5

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 - modul SVG

• dep: libqt5widgets5 (>= 5.7.0)

  modul ovládacích prvkov Qt 5

• dep: libsqlite3-0 (>= 3.5.9)

  zdieľaná knižnica SQLite 3

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: libsvm3

  library implementing support vector machines

• dep: libwildmagic5 (>= 5.13)

  libraries for mathematics, physics, numerical methods - runtime

• dep: libxerces-c3.2

  knižnica parsera XML s overovaním v jazyku C++

• dep: openms-common (= 2.4.0-real-1)

  package for LC/MS data management and analysis - shared data

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

• sug: openms-doc

  package for LC/MS data management and analysis - documentation

Stiahnuť topp

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	2,656.4 kB	15,117.0 kB	[zoznam súborov]