Paketti: topp (2.4.0-real-1)

[ Source: openms  ]

set of programs implementing The OpenMS Proteomic Pipeline

TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are :

  - TOPPView: A viewer for mass spectrometry data.
  - TOPPAS: An assistant for GUI-driven TOPP workflow design.
  - DTAExtractor: Extracts spectra of an MS run file to several
    files in DTA format.
  - FileConverter:  Converts between different MS file formats.
  - FileFilter: Extracts or manipulates portions of data from peak,
    feature or consensus feature files.
  - SpectraMerger: Merges spectra from an LC/MS map, either by
    precursor or by RT blocks.
  - BaselineFilter: Removes the baseline from profile spectra using a
    top-hat filter.
  - InternalCalibration: Applies an internal calibration.
  - PTModel: Trains a model for the prediction of proteotypic
    peptides from a training set.
  - RTPredict: Predicts retention times for peptides using a model
    trained by RTModel.
  - ExecutePipeline: Executes workflows created by TOPPAS.

Tagit: Interface Toolkit: Qt

Muut pakettiin topp liittyvät paketit

• dep: coinor-libcbc3

  Coin-or branch-and-cut mixed integer programming solver (shared libraries)

• dep: coinor-libcgl1

  COIN-OR Cut Generation Library

• dep: coinor-libclp1

  Coin-or linear programming solver (shared libraries)

• dep: coinor-libcoinutils3v5

  Coin-or collection of utility classes (binaries and libraries)

• dep: coinor-libosi1v5

  COIN-OR Open Solver Interface

• dep: libboost-date-time1.67.0

  set of date-time libraries based on generic programming concepts

• dep: libboost-iostreams1.67.0

  Boost.Iostreams -kirjasto

• dep: libboost-math1.67.0

  Boost.Math Library

• dep: libboost-regex1.67.0 (>= 1.67.0-10)

  regular expression library for C++

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.14)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC:n apukirjasto

• dep: libglpk40 (>= 4.59)

  linear programming kit with integer (MIP) support

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libopenms2.4.0 (= 2.4.0-real-1)

  library for LC/MS data management and analysis - runtime

• dep: libqt5core5a (>= 5.11.0~rc1)

  Qt 5 core module

• dep: libqt5gui5 (>= 5.8.0)

  Qt 5 GUI module

• dep: libqt5network5 (>= 5.7.0)

  Qt 5 network module

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 SVG module

• dep: libqt5widgets5 (>= 5.7.0)

  Qt 5 widgets module

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 (jaettu kirjasto)

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: libsvm3

  library implementing support vector machines

• dep: libwildmagic5 (>= 5.13)

  libraries for mathematics, physics, numerical methods - runtime

• dep: libxerces-c3.2

  validating XML parser library for C++

• dep: openms-common (= 2.4.0-real-1)

  package for LC/MS data management and analysis - shared data

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

• sug: openms-doc

  package for LC/MS data management and analysis - documentation

Imuroi topp

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	2,656.4 kt	15,117.0 kt	[tiedostoluettelo]