Balík: mosdepth (0.3.1+ds-2)

[ Zdroj: mosdepth  ]

BAM/CRAM depth calculation biological sequencing

Many small reads are produced by high-throughput "next generation" sequencing technologies. The final sequence is derived from how these reads are overlapping towards a consensus. The more reads are covering/confirming parts of a nucleotide seq, the higher the confidence is. Too many reads would be indicative of e.g. repeats in the genome.

mosdepth can output:

 *  per-base depth about 2x as fast samtools depth--about 25 minutes
    of CPU time for a 30X genome.
 *  mean per-window depth given a window size--as would be used for
    CNV calling.
 *  the mean per-region given a BED file of regions.
 *  a distribution of proportion of bases covered at or above a given
    threshold for each chromosome and genome-wide.
 *  quantized output that merges adjacent bases as long as they fall
    in the same coverage bins e.g. (10-20)
 *  threshold output to indicate how many bases in each region are
    covered at the given thresholds.

when appropriate, the output files are bgzipped and indexed for ease of use.

Ostatné balíky súvisiace s balíkom mosdepth

• dep: libc6 (>= 2.1.3) [i386]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [mips64el, mipsel]

  dep: libc6 (>= 2.4) [armel, armhf]

Stiahnuť mosdepth

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	152.5 kB	564.0 kB	[zoznam súborov]
arm64	140.7 kB	544.0 kB	[zoznam súborov]
armel	131.7 kB	488.0 kB	[zoznam súborov]
armhf	134.6 kB	388.0 kB	[zoznam súborov]
i386	164.7 kB	583.0 kB	[zoznam súborov]
mips64el	143.9 kB	635.0 kB	[zoznam súborov]
mipsel	145.8 kB	584.0 kB	[zoznam súborov]
ppc64el	166.6 kB	724.0 kB	[zoznam súborov]