Paketti: mosdepth (0.3.1+ds-2)

[ Source: mosdepth  ]

BAM/CRAM depth calculation biological sequencing

Many small reads are produced by high-throughput "next generation" sequencing technologies. The final sequence is derived from how these reads are overlapping towards a consensus. The more reads are covering/confirming parts of a nucleotide seq, the higher the confidence is. Too many reads would be indicative of e.g. repeats in the genome.

mosdepth can output:

 *  per-base depth about 2x as fast samtools depth--about 25 minutes
    of CPU time for a 30X genome.
 *  mean per-window depth given a window size--as would be used for
    CNV calling.
 *  the mean per-region given a BED file of regions.
 *  a distribution of proportion of bases covered at or above a given
    threshold for each chromosome and genome-wide.
 *  quantized output that merges adjacent bases as long as they fall
    in the same coverage bins e.g. (10-20)
 *  threshold output to indicate how many bases in each region are
    covered at the given thresholds.

when appropriate, the output files are bgzipped and indexed for ease of use.

Muut pakettiin mosdepth liittyvät paketit

• dep: libc6 (>= 2.1.3) [i386]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [mips64el, mipsel]

  dep: libc6 (>= 2.4) [armel, armhf]

Imuroi mosdepth

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	152.5 kt	564.0 kt	[tiedostoluettelo]
arm64	140.7 kt	544.0 kt	[tiedostoluettelo]
armel	131.7 kt	488.0 kt	[tiedostoluettelo]
armhf	134.6 kt	388.0 kt	[tiedostoluettelo]
i386	164.7 kt	583.0 kt	[tiedostoluettelo]
mips64el	143.9 kt	635.0 kt	[tiedostoluettelo]
mipsel	145.8 kt	584.0 kt	[tiedostoluettelo]
ppc64el	166.6 kt	724.0 kt	[tiedostoluettelo]