Balík: augur (11.0.0-1)

[ Zdroj: augur  ]

pipeline components for real-time virus analysis

The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.

nextstrain is comprised of three components:

  * fauna: database and IO scripts for sequence and serological data
  * augur: informatic pipelines to conduct inferences from raw data
  * auspice: web app to visualize resulting inferences

Ostatné balíky súvisiace s balíkom augur

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: iqtree

  efficient phylogenetic software by maximum likelihood

• dep: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-bcbio-gff

  Python3 library to read and write Generic Feature Format

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-boto (>= 2.38.0)

  rozhranie jazyka Python k Amazon Web Services - Python 3.x

• dep: python3-cvxopt

  Python3 package for convex optimization

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-ipdb

  IPython-based pdb replacement (Python 3 version)

• dep: python3-jsonschema

  (ďalšia) implementácia JSON Schema (Draft 3 a 4) - Python 3.x

• dep: python3-matplotlib (>= 1.5.1)

  systém v Pythone na vykresľovanie v štýle podobnom Matlabu - Python 3

• dep: python3-packaging

  základné nástroje balíkov jazyka Python 3

• dep: python3-pandas (>= 0.16.2)

  údajové štruktúry „relačných“ dát alebo dát „s označením“

• dep: python3-schedule

  Job scheduling for humans (Python 3)

• dep: python3-seaborn (>= 0.6.0)

  statistical visualization library for Python3

• dep: python3-treetime

  inference of time stamped phylogenies and ancestral reconstruction (Python 3)

• dep: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• dep: seqmagick

  imagemagick-like frontend to Biopython SeqIO

• dep: vcftools

  Collection of tools to work with VCF files

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