Paket: augur (11.0.0-1)

[ Quellcode: augur  ]

pipeline components for real-time virus analysis

The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.

nextstrain is comprised of three components:

  * fauna: database and IO scripts for sequence and serological data
  * augur: informatic pipelines to conduct inferences from raw data
  * auspice: web app to visualize resulting inferences

Andere Pakete mit Bezug zu augur

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: iqtree

  efficient phylogenetic software by maximum likelihood

• dep: mafft

  Programm für multiples Alignment von Aminosäure- oder Nukleotidsequenzen

• dep: python3

  Interaktive objektorientierte Hochsprache (Python3-Standardversion)

• dep: python3-bcbio-gff

  Python3 library to read and write Generic Feature Format

• dep: python3-biopython

  Python-3-Bibliothek für die Bioinformatik

• dep: python3-boto (>= 2.38.0)

  Python interface to Amazon's Web Services - Python 3.x

• dep: python3-cvxopt

  Python3 package for convex optimization

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-ipdb

  IPython-based pdb replacement (Python 3 version)

• dep: python3-jsonschema

  Eine (andere) Implementierung von JSON Schema (Draft 3 und 4) - Python 3.x

• dep: python3-matplotlib (>= 1.5.1)

  Python-3-System ähnlich Matlab zur Ausgabe von Zeichnungen

• dep: python3-packaging

  Kern-Dienstprogramme für Python3-Pakete

• dep: python3-pandas (>= 0.16.2)

  data structures for "relational" or "labeled" data

• dep: python3-schedule

  Job scheduling for humans (Python 3)

• dep: python3-seaborn (>= 0.6.0)

  statistical visualization library for Python3

• dep: python3-treetime

  inference of time stamped phylogenies and ancestral reconstruction (Python 3)

• dep: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• dep: seqmagick

  imagemagick-like frontend to Biopython SeqIO

• dep: vcftools

  Collection of tools to work with VCF files

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