Package: libhts3 (1.17+ds-1) [debports]

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C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

Other Packages Related to libhts3

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libcurl3-gnutls (>= 7.18.0)

  easy-to-use client-side URL transfer library (GnuTLS flavour)

• dep: libdeflate0 (>= 1.0)

  fast, whole-buffer DEFLATE-based compression and decompression

• dep: libhtscodecs2 (>= 1.3.0)

  Custom compression for CRAM and others

• dep: liblzma5 (>= 5.1.1alpha+20120614)

  XZ-format compression library

• dep: libssl3 (>= 3.0.0)

  Secure Sockets Layer toolkit - shared libraries

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

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Architecture	Package Size	Installed Size	Files
riscv64 (unofficial port)	389.8 kB	781.0 kB	[list of files]