Пакет: circlator (1.5.6-12)

[ Источник: circlator  ]

circularize genome assemblies

Circlator is a tool to automate assembly circularization for bacterial and small eukaryotic genomes and produce accurate linear representations of circular sequences.

Теги: Биология: Нуклеиновые кислоты, Область: Биология, field::biology:bioinformatics, implemented-in::python, Роль: Программа, Наука: science::calculation, works-with::biological-sequence, Работает с: Файлы

Другие пакеты, относящиеся к circlator

• dep: bwa

  Burrows-Wheeler Aligner

• dep: canu

  single molecule sequence assembler for genomes

• dep: fastaq

  FASTA and FASTQ file manipulation tools

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: prodigal

  Microbial (bacterial and archaeal) gene finding program

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-openpyxl

  Python 3 module to read/write OpenXML xlsx/xlsm files

• dep: python3-packaging

  core utilities for python3 packages

• dep: python3-pymummer

  Python 3 interface to MUMmer

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: spades

  genome assembler for single-cell and isolates data sets

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Архитектура	Размер пакета	В установленном виде	Файлы
all	4 496,3 Кб	11 642,0 Кб	[список файлов]