Pacote: unicycler (0.5.1+dfsg-3)

[ Fonte: unicycler  ]

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

Outros pacotes relacionados a unicycler

• dep: bcftools

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• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: default-jre

  ambiente de execução Java padrão ou compatível com Java

• dep: libc6 (>= 2.38)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  Biblioteca de suporte GCC

• dep: libstdc++6 (>= 13.1)

  Biblioteca C++ padrão da GNU v3

• dep: miniasm

  ultrafast de novo assembler for long noisy DNA sequencing reads

• dep: ncbi-blast+

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• dep: pilon

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• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3~)

• dep: racon

  consensus module for raw de novo DNA assembly of long uncorrected reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: spades (>= 3.14)

  genome assembler for single-cell and isolates data sets

• dep: zlib1g (>= 1:1.1.4)

  biblioteca de compressão - runtime (tempo de execução)

• rec: unicycler-data

  hybrid assembly pipeline for bacterial genomes (data package)

Download de unicycler

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Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	877.6 kB	3,210.0 kB	[lista de arquivos]