Pacote: ivar (1.4.4+dfsg-1)

[ Fonte: ivar  ]

functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

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Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	224.7 kB	1,532.0 kB	[lista de arquivos]
arm64	205.7 kB	1,556.0 kB	[lista de arquivos]
i386	236.7 kB	1,546.0 kB	[lista de arquivos]
mips64el	215.6 kB	1,636.0 kB	[lista de arquivos]
riscv64	216.4 kB	1,420.0 kB	[lista de arquivos]