Package: bio-tradis (1.4.5+dfsg2-2)

[ Source: bio-tradis  ]

analyse the output from TraDIS analyses of genomic sequences

Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses.

The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools.

Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.

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• dep: libbio-perl-perl

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• dep: libmoose-perl

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• dep: libtext-csv-perl

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• dep: r-base-core

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• dep: r-cran-getopt

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• dep: r-cran-mass

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• dep: samtools

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• dep: smalt

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• dep: tabix

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• rec: artemis

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• rec: r-bioc-edger

  Empirical analysis of digital gene expression data in R

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