Pacote: abacas (1.3.1-9)
Links para abacas
Recursos de Debian:
- Relatórios de bug
- Informação de desenvolvedor(a)
- Debian Changelog
- Arquivo de copyright
- Rastreador de patch Debian
Baixe o pacote-fonte abacas:
Mantenedores(as):
- Debian Med Packaging Team (QA Página, E-mail Arquivo)
- Andreas Tille (QA Página)
- Nilesh Patra (QA Página)
Fontes externas:
- Pagina principal [abacas.sourceforge.net]
Pacotes similares:
close gaps in genomic alignments from short reads
ABACAS (Algorithm Based Automatic Contiguation of Assembled Sequences) intends to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
ABACAS uses MUMmer to find alignment positions and identify syntenies of assembled contigs against the reference. The output is then processed to generate a pseudomolecule taking overlapping contigs and gaps in to account. ABACAS generates a comparison file that can be used to visualize ordered and oriented contigs in ACT. Synteny is represented by red bars where colour intensity decreases with lower values of percent identity between comparable blocks. Information on contigs such as the orientation, percent identity, coverage and overlap with other contigs can also be visualized by loading the outputted feature file on ACT.
Outros pacotes relacionados a abacas
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- dep: mummer
- alinhamento eficiente de seqüência para genomas completos
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- rec: primer3
- tool to design flanking oligo nucleotides for DNA amplification
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- sug: abacas-examples
- sample data for abacas to close gaps in genomic alignments
Download de abacas
Arquitetura | Tamanho do pacote | Tamanho instalado | Arquivos |
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all | 24.1 kB | 109.0 kB | [lista de arquivos] |