Package: sigma-align (1.1.3-9)

[ Source: sigma-align  ]

Simple greedy multiple alignment of non-coding DNA sequences

Sigma (“Simple greedy multiple alignment”) is an alignment program. It's algorithm and scoring scheme are designed specifically for non-coding DNA sequence.

It uses a strategy of seeking the best possible gapless local alignments. This happens at each step making the best possible alignment consistent with existing alignments. It scores the significance of the alignment based on the lengths of the aligned fragments and a background model. These may be supplied or estimated from an auxiliary file of intergenic DNA.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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alpha (unofficial port)	23.0 kB	89.0 kB	[list of files]
amd64	23.0 kB	61.0 kB	[list of files]
arm64	22.1 kB	89.0 kB	[list of files]
armel	22.1 kB	56.0 kB	[list of files]
armhf	20.2 kB	48.0 kB	[list of files]
hppa (unofficial port)	22.6 kB	57.0 kB	[list of files]
i386	23.7 kB	60.0 kB	[list of files]
ia64 (unofficial port)	28.3 kB	86.0 kB	[list of files]
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mips64el	23.0 kB	91.0 kB	[list of files]
ppc64 (unofficial port)	25.8 kB	89.0 kB	[list of files]
ppc64el	26.2 kB	89.0 kB	[list of files]
riscv64	23.3 kB	53.0 kB	[list of files]
s390x	24.0 kB	65.0 kB	[list of files]
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sparc64 (unofficial port)	21.2 kB	1,050.0 kB	[list of files]
x32 (unofficial port)	22.9 kB	56.0 kB	[list of files]