Pacote: mcaller (1.0.3+git20210624.b415090-3)

[ Fonte: mcaller  ]

find methylation in nanopore reads

   H
   |
 H-C-aller
   |
   H

This program is designed to call m6A from nanopore data using the differences between measured and expected currents.

Outros pacotes relacionados a mcaller

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-h5py

  general-purpose Python interface to hdf5

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python3-numpy

  Python library for numerical computations (Python 3)

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  ferramentas científicas para Python 3

• dep: python3-seaborn

  statistical visualization library for Python3

• dep: python3-sklearn

  Python modules for machine learning and data mining - Python 3

• rec: nanopolish

  consensus caller for nanopore sequencing data

  ou poretools

  toolkit for nanopore nucleotide sequencing data

• sug: bwa

  Burrows-Wheeler Aligner

• sug: graphmap

  Pacote não disponível

Download de mcaller

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
all	18.5 kB	83.0 kB	[lista de arquivos]