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Package: sga (0.10.15-7) [debports]

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de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

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Download sga

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 755.4 kB2,753.0 kB [list of files]