Package: sga (0.10.15-7) [debports]

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de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Other Packages Related to sga

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• dep: libc6.1 (>= 2.34)

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• dep: libgcc-s1 (>= 3.4)

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• dep: python3

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• dep: python3-pysam

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• dep: python3-ruffus

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• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

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Download sga

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	755.4 kB	2,753.0 kB	[list of files]